PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.008G179200.1
Common NamePHAVU_008G179200g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family ZF-HD
Protein Properties Length: 262aa    MW: 28416.7 Da    PI: 6.9249
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.008G179200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer97.78.7e-3152108360
         ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 
                         +vrY+eC+kNhA+s GghavDGC+Efmp+ ge+gt +a+ CaAC+CHRnFHR+e + e
  Phvul.008G179200.1  52 AVRYRECQKNHAVSFGGHAVDGCCEFMPA-GEDGTLEAVICAACNCHRNFHRKEIDGE 108
                         69**************************9.999********************98765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257741.0E-2053106IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047701.6E-2853105IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.4E-2754105IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.36655104IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466898.97E-21185257IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.1E-31186257IPR009057Homeodomain-like
TIGRFAMsTIGR015651.7E-25199256IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MEFDDQEEQE EEMGMPEPPV PAPVASYDSL GNSAARSKVG GEGRKGAFGA GAVRYRECQK  60
NHAVSFGGHA VDGCCEFMPA GEDGTLEAVI CAACNCHRNF HRKEIDGEMT SFHHRAQPPP  120
PPLHHHHQFS PYYHHRVPQH PAAAGYLHHH LATPPMAQHR PLALPAAASG GGLSREDEDI  180
SNPSSSGGGG GGGGGGGSKK RFRTKFTQEQ KDKMLAFAEQ LGWRIQKHDE SAVEQFCAET  240
NVERKVLKVW MHNNKNTLVC L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A1e-291982571675ZF-HD homeobox family protein
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1185197SGGGGGGGGGGGS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007141241.10.0hypothetical protein PHAVU_008G179200g
SwissprotQ9SB616e-74ZHD2_ARATH; Zinc-finger homeodomain protein 2
TrEMBLV7B6P50.0V7B6P5_PHAVU; Uncharacterized protein
STRINGGLYMA14G35770.11e-133(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20634253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.13e-63homeobox protein 22